| 1 | MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Softw… (10.1093/molbev/msm092) | Abstract References ORCID License | 436.78 | 23322 |
| 2 | PAML 4: Phylogenetic Analysis by Maximum Likelihood (10.1093/molbev/msm088) | Abstract References ORCID License | 410.36 | 12694 |
| 3 | Median-joining networks for inferring intraspecific phylogen… (10.1093/oxfordjournals.molbev.a026036) | Abstract References ORCID License | 399.72 | 9935 |
| 4 | The neighbor-joining method: a new method for reconstructing… (10.1093/oxfordjournals.molbev.a040454) | Abstract References ORCID License | 379.23 | 6197 |
| 5 | Multiple Comparisons of Log-Likelihoods with Applications to… (10.1093/oxfordjournals.molbev.a026201) | Abstract References ORCID License | 354.06 | 3471 |
| 6 | MAFFT Multiple Sequence Alignment Software Version 7: Improv… (10.1093/molbev/mst010) | Abstract ORCID License | 347.42 | 42883 |
| 7 | Bayesian Coalescent Inference of Past Population Dynamics fr… (10.1093/molbev/msi103) | Abstract References ORCID License | 344.95 | 2814 |
| 8 | MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0 (10.1093/molbev/mst197) | Abstract ORCID License | 340.61 | 34785 |
| 9 | MEGA5: Molecular Evolutionary Genetics Analysis Using Maximu… (10.1093/molbev/msr121) | Abstract ORCID License | 339.47 | 33594 |
| 10 | Phylogenetic relationships among ascomycetes: evidence from… (10.1093/oxfordjournals.molbev.a026092) | Abstract References ORCID License | 339.41 | 2477 |
| 11 | Bayes Empirical Bayes Inference of Amino Acid Sites Under Po… (10.1093/molbev/msi097) | Abstract References ORCID License | 330.58 | 2021 |
| 12 | IQ-TREE: A Fast and Effective Stochastic Algorithm for Estim… (10.1093/molbev/msu300) | Abstract ORCID License | 328.81 | 24220 |
| 13 | Quartet Puzzling: A Quartet Maximum-Likelihood Method for Re… (10.1093/oxfordjournals.molbev.a025664) | Abstract References ORCID License | 327.67 | 1890 |
| 14 | Neighbor-Net: An Agglomerative Method for the Construction o… (10.1093/molbev/msh018) | Abstract References ORCID License | 322.89 | 1693 |
| 15 | Estimation of the number of nucleotide substitutions in the… (10.1093/oxfordjournals.molbev.a040023) | Abstract References ORCID License | 321.64 | 1645 |
| 16 | Evaluation of an Improved Branch-Site Likelihood Method for… (10.1093/molbev/msi237) | Abstract References ORCID License | 319.56 | 1568 |
| 17 | BIONJ: an improved version of the NJ algorithm based on a si… (10.1093/oxfordjournals.molbev.a025808) | Abstract References ORCID License | 316.70 | 1468 |
| 18 | Markov Chasin Monte Carlo Algorithms for the Bayesian Analys… (10.1093/oxfordjournals.molbev.a026160) | Abstract References ORCID License | 307.59 | 1190 |
| 19 | Likelihood ratio tests for detecting positive selection and… (10.1093/oxfordjournals.molbev.a025957) | Abstract References ORCID License | 307.37 | 1184 |
| 20 | Estimating the rate of evolution of the rate of molecular ev… (10.1093/oxfordjournals.molbev.a025892) | Abstract References ORCID License | 301.49 | 1034 |
| 21 | UFBoot2: Improving the Ultrafast Bootstrap Approximation (10.1093/molbev/msx281) | Abstract ORCID License | 299.97 | 9989 |
| 22 | Bayesian phylogenetic inference using DNA sequences: a Marko… (10.1093/oxfordjournals.molbev.a025811) | Abstract References ORCID License | 298.86 | 973 |
| 23 | Numerous transposed sequences of mitochondrial cytochrome ox… (10.1093/oxfordjournals.molbev.a025612) | Abstract References ORCID License | 298.32 | 961 |
| 24 | The Evolution of Transcriptional Regulation in Eukaryotes (10.1093/molbev/msg140) | Abstract References ORCID License | 298.05 | 955 |
| 25 | Selection of Conserved Blocks from Multiple Alignments for T… (10.1093/oxfordjournals.molbev.a026334) | Abstract ORCID License | 297.41 | 9235 |
| 26 | Bayesian Phylogenetics with BEAUti and the BEAST 1.7 (10.1093/molbev/mss075) | Abstract ORCID License | 296.75 | 9049 |
| 27 | jModelTest: Phylogenetic Model Averaging (10.1093/molbev/msn083) | Abstract ORCID License | 296.37 | 8944 |
| 28 | The Basic Helix-Loop-Helix Transcription Factor Family in Pl… (10.1093/molbev/msg088) | Abstract References ORCID License | 296.09 | 913 |
| 29 | Bayes or Bootstrap? A Simulation Study Comparing the Perform… (10.1093/molbev/msg028) | Abstract References ORCID License | 296.00 | 911 |
| 30 | A Nonparametric Approach to Estimating Divergence Times in t… (10.1093/oxfordjournals.molbev.a025731) | Abstract References ORCID License | 294.69 | 884 |
| 31 | Microsatellites Within Genes: Structure, Function, and Evolu… (10.1093/molbev/msh073) | Abstract References ORCID License | 294.10 | 872 |
| 32 | Population growth of human Y chromosomes: a study of Y chrom… (10.1093/oxfordjournals.molbev.a026091) | Abstract References ORCID License | 290.47 | 802 |
| 33 | Application of Phylogenetic Networks in Evolutionary Studies (10.1093/molbev/msj030) | Abstract ORCID License | 290.09 | 7375 |
| 34 | Paleontological Evidence to Date the Tree of Life (10.1093/molbev/msl150) | Abstract References ORCID License | 287.45 | 748 |
| 35 | DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Se… (10.1093/molbev/msx248) | Abstract ORCID License | 286.56 | 6619 |
| 36 | Can three incongruence tests predict when data should be com… (10.1093/oxfordjournals.molbev.a025813) | Abstract References ORCID License | 283.44 | 682 |
| 37 | A Hidden Markov Model approach to variation among sites in r… (10.1093/oxfordjournals.molbev.a025575) | Abstract References ORCID License | 280.28 | 634 |
| 38 | SeaView Version 4: A Multiplatform Graphical User Interface… (10.1093/molbev/msp259) | Abstract ORCID License | 278.35 | 5144 |
| 39 | FastTree: Computing Large Minimum Evolution Trees with Profi… (10.1093/molbev/msp077) | Abstract ORCID License | 278.29 | 5134 |
| 40 | PartitionFinder: Combined Selection of Partitioning Schemes… (10.1093/molbev/mss020) | Abstract ORCID License | 277.86 | 5066 |
| 41 | Asymmetric substitution patterns in the two DNA strands of b… (10.1093/oxfordjournals.molbev.a025626) | Abstract References ORCID License | 276.34 | 579 |
| 42 | Ultrafast Approximation for Phylogenetic Bootstrap (10.1093/molbev/mst024) | Abstract ORCID License | 273.87 | 4483 |
| 43 | First molecular evidence for the existence of a Tardigrada +… (10.1093/oxfordjournals.molbev.a025573) | Abstract References ORCID License | 273.80 | 546 |
| 44 | A Comparative Summary of Genetic Distances in the Vertebrate… (10.1093/oxfordjournals.molbev.a025875) | Abstract References ORCID License | 272.35 | 528 |
| 45 | A General Comparison of Relaxed Molecular Clock Models (10.1093/molbev/msm193) | Abstract References ORCID License | 268.48 | 483 |
| 46 | Two novel gene orders and the role of light-strand replicati… (10.1093/oxfordjournals.molbev.a025706) | Abstract References ORCID License | 267.58 | 473 |
| 47 | Temporal Patterns of Fruit Fly (Drosophila) Evolution Reveal… (10.1093/molbev/msg236) | Abstract References ORCID License | 267.39 | 471 |
| 48 | Bayesian Phylogenetic Model Selection Using Reversible Jump… (10.1093/molbev/msh123) | Abstract References ORCID License | 266.56 | 462 |
| 49 | The age and evolution of non-LTR retrotransposable elements (10.1093/oxfordjournals.molbev.a026164) | Abstract References ORCID License | 266.28 | 459 |
| 50 | Measures of divergence between populations and the effect of… (10.1093/oxfordjournals.molbev.a025953) | Abstract References ORCID License | 262.74 | 423 |